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SRX6080785: GSM3895467: BLM_d21_Veh_R5_skin; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 36.3M spots, 5.5G bases, 2.1Gb downloads

Submitted by: NCBI (GEO)
Study: A murine systemic bleomycin model of scleroderma
show Abstracthide Abstract
A well-characterized mouse model of SSc involves daily subcutaneous injections of the antitumor antibiotic bleomycin (BLM), which leads to localized dermal fibrosis as well as pulmonary fibrosis. We have termed this the “Systemic Bleomycin Model” to distinguish it from the already-established Intratracheal (IT) model. We utilize this model, which mimics several key features of human SSc, to examine the pathological mechanisms underlying the development and progression of fibrosis in SSc. Overall design: Female C57BL/6 mice (~12 weeks old) were used for this study. An electric shaver was used to shave the interscapular region on the back of each mouse, and a non-toxic permanent marker was used to draw two small circles on the skin within the shaved area on each mouse. Fibrosis was induced by daily subcutaneous injections of either bleomycin (10mg/kg/day; 100µl per injection site of 1mg/ml solution for these ~20gm mice) or PBS (vehicle control) within the marked interscapular regions. Injections began on Day 0 and were done five times per week for two weeks, using a 27-gauge needle. (Bhattacharyya S. et al., Sci Transl Med 2014 Apr 16;6(232):232ra50; Huang J. et al., Ann Rheum Dis 2015 Apr 9. pii: annrheumdis-2014-207109). Beginning on Day 12, the ALK5 inhibitor SB525334 (30mpk) or vehicle was delivered (PO, BID dosing). Note that Groups 1-2 and Groups 3-4 were sacrificed on Day 7 and Day 14, respectively, and thus did not receive oral dosing. Groups 5-7 were sacrificed on Day 21. The last oral doses were administered on Day 27. Groups 8-10 were sacrificed on Day 28. Groups 11-12 (which specifically serve to assess resolution in this model, and do not examine the effect of Alk5 inhibition) were sacrificed on Day 42.
Sample: BLM_d21_Veh_R5_skin
SAMN12082714 • SRS4982618 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was prepared using the RNeasy 96 kit (Qiagen, Germany) according to the manufacturer's instructions. cDNA synthesis was performed with high capacity RNA to cDNA kit (Life Technologies, Carlsbad, CA). Sequencing libraries were generated using Illumina TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero (Illumina, San Diego, CA) following manufacturer's instruction. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM3895467
Links:
Runs: 1 run, 36.3M spots, 5.5G bases, 2.1Gb
Run# of Spots# of BasesSizePublished
SRR931320836,275,3155.5G2.1Gb2019-06-18

ID:
8131977

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